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The 3-D structure of a protein in space. It can refer to secondary structures, such as alpha helices or beta sheets, or the 3-D coordinates of the atoms making up a protein.
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Is there a standard way to clean a PDB file and re-number its residues?
Is there a pre-existing tool which will tidy up the numbering of a PDB file?
Firstly, I would like to re-number the residues on inserts to make the icode an actual residue in the chain (by that I me …