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Results tagged with plink
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Visualize PLINK pedigree files
We use kinship2 R package to visualize pedigree files (.fam plink files). For some reasons, some characters from plink ped aren't supported (like "-9" for unknown genre or affected status). … $V5[pedfile$V1==famID]),affected=as.numeric(pedfile$affected[pedfile$V1==famID]))
plot.pedigree(ped,cex=0.7,align=TRUE)
title(famID)
}
And we call it this way:
Rscript <kinshipScript.R> <plink …
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