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Ontologies are collections of terms organized in a graph that can be used to annotate biological data, for example, tagging genes or variants with terms from disease or phenotype ontologies. The most well known bio ontology is the Gene Ontology (GO), used for functional annotation of genes. Sites such as the OBO Foundry and Bioportal can be used to find bio-ontologies.
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Is there a way to measure cell line similarity using python?
I have a list of cell lines that should be compared against another list of cell lines as pairs. I am trying to find a way in order for me to compare two cells such as MCF7 and 10964c cell lines. I …
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semantic similarity measurement for cell line ontologies
Or to be exact, there are actually many ontology similarity measurements. And I want to know which similarity measurement is best suited for my case (cell line ontologies similarities). …