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A file format used in structural biology to describe the 3-D coordinates of atoms of a biological structure, often a protein. Can also refer to the Protein Data Bank database, which stores all the submitted biological structures, most of which were obtained using X-ray crystallography.

3 votes
1 answer
5k views

Merge multiple PDB files into a single file

I have several pdb files and each of them corresponds to a domain on a protein. … I want to merge these files into one single pdb for the whole protein, and the approach I'm looking for should allow me to order these domains according to the order by which they're located on the protein …
Morrian Lynn's user avatar
2 votes
3 answers
352 views

How to find a homolog that has a PDB structure available

I tried to find a homolog that has a PDB structure available so I can use this PDB file for comparative modeling. I ran a BLAST search but none of the search results seemed to have a known structure. …
Morrian Lynn's user avatar