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Results tagged with plink
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user 9131
1
vote
0
answers
38
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plink doesn't generate a sexcheck-file
I was executing the following command plink.exe --file GWAS --check-sex --noweb
Expecthing to get a plink.sexcheck file but I don't get anything. Not even an error. The output is always:
Skipping web …
1
vote
0
answers
98
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Reliably create female and male individuals in a -ped file for plink
But when I then run pLink with the --check-sex argument I get a sexcheck file where there's only zeroes in the SNPSEX column. …
1
vote
1
answer
80
views
Random GWAS data generator
General stuff one can then filter out with plink or similar software to increase the quality of the data. … Then a student would analyze these random files in plink and I already know what the outcome should be, therefore I can see right away if he or she did it right. …