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Results tagged with r
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user 9709
Please supplement your question with a minimal reproducible example. Use dput() for data and specify all non-base packages with library calls. For statistical questions please use http://stats.stackexchange.com.
0
votes
1
answer
625
views
Error in cor(exprs(gse), use = "c") : no complete element pairs
I'm trying to plot a heat map for a "GSE133399", I retrieved the GSE using GEOquery package and then assigned to an object and then tried to plot a heatmap, but I was not successful, I used the follow …
- 139
1
vote
1
answer
60
views
Table error when combining counts columns
using this:
%R files = list.files(path=".", pattern="GSM")
%R file1 = read.table("GSM2580319_counts01.txt" , col.names=c("gene_id","GSM2580319_counts01.txt" ))
%R file2 = read.table("GSM2580320_counts02 … .txt", col.names=c("gene_id","GSM2580324_counts04.txt"))
%R out.file = merge (file1, file2, by=c("gene_id"))
%R out.file2 <- merge(out.file, file3, by=c(\"gene_id\"))
%R out.file3 <- merge(out.file2, file4 …
- 139
1
vote
1
answer
259
views
How to calculate RNA copies in qPCR using R?
I have these Ct data from qPCR for a series of samples A-H, I want to quantify the RNA copies of my samples using R:
Sample_ID Replicate1_Ct Replicate2_Ct
A 22.92 24.21
B …
- 139