Simple question but I am stumped. (I am still learning Nextflow)
I have a process which takes as input a channel of files and processes each file separately.
There is a second process which needs to wait until all files are complete, so it can merge the outputs into a single collated file.
How can I do this? I have tried subscribing to "onComplete" event to no avail as I cannot specify a process as the function to trigger.
files = Channel.from params.the_files_list
process process_files {
input:
val file_path from files
output:
stdout result
"""
python ./process_one_file.py $file_path
"""
}
process merge_results {
input:
????
output:
????
script:
"""
echo "How to trigger this process once, after all individual files are processed?"
"""
}
??? Want to do something like this
result.subscribe onComplete: merge_results
```