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The format of the raw data that upload in GEO is different, like TXT, CEL or other form. How can I extract the list of genes name from these formats? And then how can I normalize them with R?

I would be really glad if anyone write step by step a complete set of codes for R with an example.

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Answer from @benn, converted from comments:

You can find a step by step description in the limma user's guide. Just download the CEL files, and follow the user guide.

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