There is a scRNAseq Bioconductor package with a few different example scRNA-seq datasets. Are there any R packages that offer multiple modalities of single-cell data? For example, hashtags or ADTs or ATAC-seq. I am trying to find something that can be used for testing or for a quick tutorial. Preferably something that is on CRAN or Bioconductor.
1 Answer
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These tutorials on Seurat multimodal data and the wrapper Seurat data are easy ways to start.
The wrapper has some cite-seq data preinstalled making it easy to work with benchmarked data sets
If you are using Seurat u can just as well have a look at Signac to start working with some sc-atac seq