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I'm trying to build a genomic database for DNA alignments. I started with NCBI accessions, but the data is very multiplicative, so I want to use subset of [max] N different strains for each specie. my question is: I can i obtain the minimal N that the samples will be diverse enough and will cover the specie good?

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  • $\begingroup$ Depends on what you are looking at (species) and secondly what post-alignment analysis you are planning. $\endgroup$
    – M__ ♦
    Commented Mar 3, 2020 at 10:36

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Check out the progenomes database: http://progenomes.embl.de/

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