I'm using plink (1.9b5) to do allelic association. My problem is that my output does not write the
rsID (SNP), it just writes a dot.
CHR SNP BP A1 F_A F_U A2 P OR 1 . 1014 A 0.18 0.07 C 0.22 3.03
plink --bed file.bed --bim file.bim --fam file.fam --make-bed --out output
Can someone please help me see what I'm doing wrong?