All Questions
Tagged with single-cell transcriptome
4 questions
2
votes
0
answers
202
views
pyScenic CLI for ctx is giving error: Not a single module loaded
Hi I ran pyScenic's ctx via the command in command prompt:
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- 21
1
vote
1
answer
44
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How can to validate the presence of a certain type of cells in a single cell dataset?
I have a single cell dataset which I consider to be a reference , let say, for an human organ, I have identified some new clusters that correspond to cell types. I also have WGCNA modules that ...
- 11
2
votes
1
answer
2k
views
How to highlight specific cells in Seurat 2.4
I used Seurat 2.4 on our scRNA dataset to obtain the following tSNE plot.I was able to successfully extract cell IDs from the different clusters, and generate gene expression profiles. The analysis, ...
- 21
2
votes
2
answers
161
views
scRNA-seq differential transcript usage
Many of the modern gene-quantification tools (Salmon/Kallisto) output transcript-level (as opposed to gene-level) data. All of the scRNA-seq analysis I have seen just uses the gene-level values. I ...
- 2,209