All Questions
5 questions
3
votes
1
answer
1k
views
Subsetting of object existing of two samples
I have a Seurat object existing of an aggregate of two samples namely; RD1 and RD2. I am trying to make a subset of each sample. But it's not really working. I manage to make a subset of the cells but ...
- 131
2
votes
3
answers
5k
views
Seurat: Error in FetchData.Seurat(object = object, vars = unique(x = expr.char[vars.use]), : None of the requested variables were found:
I was trying to do subsetting via:
pbmc = subset(pbmc, subset = nFeature > 1000 & nCount > 4000)
R returns:
...
- 21
1
vote
2
answers
32
views
subsetting more than one ccle sample
I'm working with the CCLE dataset and I'm trying to subset the data to just 3 cell lines of interest but not sure how to it.
Currently, I have been subsetting one by one but is there an easier way?
<...
- 391
0
votes
2
answers
10k
views
Subsetting from seurat object based on orig.ident?
I am pretty new to Seurat. I want to subset from my original seurat object (BC3) meta.data based on orig.ident. however, when i use subset(), it returns with Error.
...
-1
votes
1
answer
58
views
simple data subsetting on r
I have a big df like following (pseudo) df and I want to retrieve values in different col. according to the rows in the first col.
...
- 199