I am trying to query metadata from the GDC Data Portal and used the sample code from its website:
import requests
import json
cases_endpt = 'https://api.gdc.cancer.gov/cases'
# The 'fields' parameter is passed as a comma-separated string of single names.
fields = ["submitter_id",
"case_id",
"primary_site",
"disease_type",
"diagnoses.vital_status"
]
fields = ','.join(fields)
params = {"fields": fields,
"format": "TSV",
"size": "100"
}
response = requests.get(cases_endpt, params = params)
print(response.content)
However, I am not getting a tsv file in return. I am ultimately getting an FPKM instead. Any help is appreciated!