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Benchmarking problems relate to problems where efficiency is key, beyond just solving a problem itself. What's the fastest or most efficient way to solve a problem?

5 votes
2 answers
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Samtools sort: most efficient memory and thread settings for many samples on a cluster

We're preparing to analyze thousands of .bam files beginning with re-alignment, sorting, etc. Complicated question: Has anyone investigated the optimal thread and memory settings to sort hundreds to t …
Mark Ebbert's user avatar
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