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How to plot the gap distribution of contigs wrt to reference genome
I have a contigs file that I generated using Minia and then I have used Minimap2 to map these contigs again to the reference genome. … The file from minimap2 looks like this:
0 17679 0 17679 + NZ_BCML01000091.1 39426 18736 36415 17679 17679 60 NM:i:0 ms:i:35358 AS:i:35358 nn:i:0 tp:A:P cm:i:3274 s1:i:17675 …