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Results tagged with linux
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user 6437
5
votes
Accepted
How I can change the name of multiple files at once in R or terminal?
just to complete your question, you can do it in R in one line.
After setting the directory as your working directory, just type the following:
file.rename(list.files(pattern = "vcf"), paste0("A",1:le …
- 15.1k
0
votes
How to download FASTA sequences from NCBI using the terminal?
(Sorry, I can't post a comment with my reputation score).
@vkkodali, interesting command I did not know about it ;). However, your command is downloading all sequences from the input file into a sing …
- 1,061
11
votes
Accepted
How to download FASTA sequences from NCBI using the terminal?
Alternatively, you can use the NCBI Entrez Direct UNIX E-utilities
Basically, you have to download the install file here: https://www.ncbi.nlm.nih.gov/books/NBK179288/bin/install-edirect.sh
In the t …
- 1,061