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I want to automate some scripts which should run after a MinION run completes. Is there a file which is produced by MinKNOW which will enable me to tell that the run has finished?

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  • $\begingroup$ Use rampart and just stop it once you've happy with coverage $\endgroup$
    – Liam McIntyre
    Sep 1, 2021 at 20:43

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You can just look for the presence of a file called "final_summary_*.txt" in the run folder. From Matt Loose.

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