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I need a gtf annotation file. UCSC doesn't give us a proper gtf file with distinct gene_id and transcript_id. It asked us to get a genePred file to convert to gtf.

But where can we get genePred files?

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It turned out that using table browser on UCSC we could download an output with all fields. That output actually contains a GenePred file but has one extra column on the left end.

The genePred file format definition is here.

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