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In R, how can I specify pairwise comparisons of interest rather than computing all possible comparisons with something like Tukey?

Here is a subset of my df. In R, how can I run pairwise comparisons of median expression between disease status for each clus_ft and use Bonferroni correction? For example, from this df subset, I ...
Kelly's user avatar
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MegaX Pairwise Matrix Error

I have a pairwise matrix that I've manually formatted into a ".mega" file following the guide in the MegaX documentation but when I go to import it into the application it gives this error: <...
rimo's user avatar
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