Questions tagged [umi]
The umi tag has no usage guidance.
3
questions
1
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2answers
105 views
How are UMIs used to dedupulicate in Drop-seq tools?
The module DigitalExpression which is part of the popular Drop-seq tools digitally count gene transcripts.
The manual is not very clear on how exactly it resolves ...
3
votes
1answer
627 views
BAM to gene expression matrix (UMI counts per gene per cell),10X
I am trying to reproduce some results of a scRNASeq experiment. However I am new to the server-side aspect of such analyses and am very confused at the moment.
The data provided by the authors of the ...
1
vote
1answer
50 views
Article GEO gives counts that are not integers. Should UMI counts be integers?
I thought that UMI counts are always integers, but when I opened several datasets provided by GEO I got confused because in some ...
