In BWA project in bwt.c file I found bwt_dump_bwt method and bwt_dump_sa method. I want to use them to read .bwt file and .sa file. I wrote the following program:
int main(void)
{
char *tmp, *prefix;
bwt_t *bwt;
prefix = bwa_idx_infer_prefix("hg19bwaidx");
tmp = calloc(strlen(prefix) + 5, 1);
strcat(strcpy(tmp, prefix), ".bwt");
bwt = bwt_restore_bwt(tmp);
return 0;
}
I got the following error:
Undefined symbols for architecture x86_64:
"_bwa_idx_infer_prefix", referenced from:
_main in readbwt-3022ec.o
"_bwt_restore_bwt", referenced from:
_main in readbwt-3022ec.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
Any help ?
Thanks.