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Results tagged with phylogenetics
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user 2338
Phylogenetics is the study of evolutionary relationships among biological entities - often species, individuals or genes.
6
votes
1
answer
250
views
What is the minimum number of individuals per group required for ADMIXTURE analysis?
What is the minimum number of individuals required per group (population/species) for an ADMIXTURE analysis to be appropriate?
Is there a way to determine this number mathematically based on the amou …
- 163
2
votes
1
answer
588
views
How can I improve ESS values for ucldMean in beast?
Using starBeast I ran a 50 locus tree, with 34 individuals, using evolutionary models indicated by AICc in jModel test. I ran this tree with a MCMC chain length of 500 million, storing every 10,000 ge …
- 163
5
votes
2
answers
1k
views
How are Principal Component analyses and Admixture analyses from a genetic alignment different?
How are Principal Component analyses and Admixture analyses from a genetic alignment different?
My understanding is that a PCA will take raw genetic differences across the entire alignment and plot …
- 163
3
votes
1
answer
231
views
Combine multiple species trees
I have five species trees run using starBeast and Beauti. Here is a link to the paper discussing both,
http://journals.plos.org/ploscompbiol/article/file?type=supplementary&id=info:doi/10.1371/journa …
- 163