3
votes
Accepted
GWAS, MWAS, EWAS: what are the (in)dependent variables?
To answer the first part of your question, the dependent and independent variable of X-WAS is kind of arbitrary and dependent on the question you asked. But it gradually becomes a convention in the ...
- 887
2
votes
Accepted
What is the pvalue from anova(glm1, glm2, test = “Chisq”) telling me in R when the glms have a negative binomial distribution?
When you fit a model, you need to check whether it's overly determined, meaning some terms cannot be determined. We can look at one of your samples, for example only for RB5 and ...
- 1,698
1
vote
Any existing workflow on Terra that can run multinomial logistic regression?
What I think is occurring is Terra is the Broad Institute's cloud service. Within that there is a Jupiter notebook and you then just use scikit-learn's (Python) LogisticRegression() using multinomial ...
M__♦
- 13k
1
vote
Accepted
Regression plot of a continuous trait - is there a binary equivalent?
I have not really seen this type of plot used when a binary outcome is being analyzed. I think in part this is due to the fact that the plot will be rather boring and difficult to interpret as there ...
- 364
1
vote
Accepted
Comparing AUCs: Discrimination of same Control from different Test Group - paired or unpaired? miRNA
Generally its paired. The bootstrapping personally I find concerning. I presume you are using it to augment your data set.
Bootstrapping at best tends to be a controversial statistical operation and ...
M__♦
- 13k
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