I need to know whether my
open or closed. For that, I need to calculate the
Heaps Alpha value from my roary pipeline results. Please help me to do the same.
Many thanks in advance.
Directly quoting from the link provide:
Roary By Andrew Page based on version 3.11.2 (22-Jan-2018)
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results.