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Questions tagged [hiv]

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How can I find fasta sequences for gp120 and gp41 for different HIV subtypes?

I need to extract the Env gp120 and gp41 subsequences for the following HIV-1 strains: A, B, C, D, N, and O. I've been successfully using UniProt for env and tat sequences, but I'm having trouble ...
Dmitrii Trubetskoy's user avatar
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Is it normal to get truncated identifiers after applying SQL scema of RegaDB?

This question was also asked on Biostars I am trying to set up RegaDB on my CentOS system, and I have installed PostgreSQL via conda. I followed the RegaDB ...
Vovin's user avatar
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3 votes
1 answer
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What is the limit of partition incompleteness in Bayesian MCMC?

I am seeking advice on whether or not to incorporate incomplete data into my BEAST analysis. I have HIV data consisting of two partitions of the pol gene: one that is 1.2 kb in length and present in ...
Vovin's user avatar
  • 435