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2 votes
2 answers
98 views

Multiple Alignment cost application

Is there any biological application/case where someone would be interested in the estimated total cost of the alignment between a set of sequences (genes or amino acids) without the aligned sequence ...
gcorso's user avatar
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2 votes
1 answer
501 views

Sequence alignment with MUSCLE

For protein multiple sequence alignment (MSA), I am using MUSCLE (v5.1). The default setting without any specifications gives a 'bad' output even though my proteins are very similar (UniProt sequence ...
Balint Biro's user avatar