2
votes
Accepted
tximport txidcol and geneidcol selecting wrong column
By setting type="salmon" you're overriding your settings for things like txIdCol. The various ...
- 19.8k
2
votes
Accepted
tx2gene file for tximport issue
The solution was to use a different library as I expected. It should be library(TxDb.Hsapiens.UCSC.hg19.ensGene). And also, as specified in the question, to remove ...
- 2,578
1
vote
tx2gene file for tximport issue
Do your ids in the expression file (from gencode) match up with the gene IDs in the transcript file (from UCSC?) I'm willing to bet that they don't. Stay consistent throughout your process. Either ...
- 530
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