Bioinformatics

Revival

 Revival
Answer more than 30 days after a question was asked as first answer scoring 2 or more. This badge can be awarded multiple times.
Awarded 166 times.
Blastp MSA to the same length
Awarded Sep 13 at 17:11
Minfi and estimateCellCounts Error: in p[trainingProbes, ]: subscript out of bounds
Awarded Aug 18 at 22:07
How to convert Foldseek .m8 alignment files to FASTA format?
Awarded Aug 8 at 12:12
Run nextflow pipeline multiple times depending on length of a list
Awarded Jul 26 at 16:35
Is there any function in Biopython to convert a DNA sequence from ambiguous to unambiguous?
Awarded Jul 23 at 12:07
Is there any function in Biopython to convert a DNA sequence from ambiguous to unambiguous?
Awarded Jul 14 at 18:55
Percentage of each cluster in Seurat
Awarded Jul 10 at 14:02
Retrieving NCBI Taxa IDs from refseq or GenBank assembly accession
Awarded Jul 4 at 5:46
How do I lift GWAS results to hg38?
Awarded Jun 15 at 23:28
Identification of unique chains in proteins by sequence similarity
Awarded Jun 7 at 16:16
Negative binomial modeling of RNA-Seq data
Awarded May 20 at 23:08
lower mapping rates in salmon v0.13 compared to previous versions
Awarded Apr 3 at 13:17
How do I include silent mutations in an oncoplot using maftools?
Awarded Mar 28 at 18:22
Is it possible to create SMILES representation out of DNA/RNA-Oligonucleotides (~50 nts)?
Awarded Mar 17 at 22:16
Normalization using parallel R script
Awarded Mar 1 at 17:45
Making a bed file for RSeQC
Awarded Mar 1 at 6:56
Different results in differential expression analysis of microarray data
Awarded Feb 3 at 14:58
Ubiquitous regulation of highly specific marker genes
Awarded Dec 18, 2022 at 11:19
Why does this modification site file contain duplicate sites and multiple related proteins?
Awarded Dec 16, 2022 at 16:18
Ubiquitous regulation of highly specific marker genes
Awarded Dec 16, 2022 at 12:47
Concatenate multiple fasta files into one file for MLST
Awarded Dec 7, 2022 at 9:35
Given a multiple sequence alignment, how do I output all of the non-consensus characters by location?
Awarded Nov 30, 2022 at 15:09
Any way to filter out highly correlated genes with limma linear model?
Awarded Nov 18, 2022 at 20:32
bedtools coverage - Report the depth at each position in each A feature
Awarded Nov 17, 2022 at 18:01
Voom function from limma package and Normalization on counts data
Awarded Nov 9, 2022 at 13:17
include a glimma interface in a shiny app
Awarded Oct 1, 2022 at 5:57
Methylation data: beta values are normally distributed
Awarded Sep 22, 2022 at 14:27
Downloading genomic protein files from accessions in Python
Awarded Sep 22, 2022 at 4:18
What is the difference between AnnotationDbi/org.Mm.eg.db and biomaRt/Mus.musculus for converting to gene symbols?
Awarded Aug 18, 2022 at 21:16
How to extract clusters from a phylogenetic tree?
Awarded Aug 17, 2022 at 7:50
Permutations of 4 amino acid sequence oligopeptide
Awarded Aug 7, 2022 at 21:11
Pymol: select low confidence regions from AlphaFold pdb file
Awarded Jul 22, 2022 at 17:17
Comparing differential expression across samples - is batch effect correction needed?
Awarded Jul 14, 2022 at 14:34
Convert Arlequin ("DNA" markers) to Genepop (PGDspider or otherwise)
Awarded Jun 16, 2022 at 12:01
Gene names from components in NMF analysis
Awarded Jun 15, 2022 at 6:56
Can you style network visualizations of directed graphs using NETWULF?
Awarded Jun 10, 2022 at 16:42
Can someone help me estimating the runtime of the pipeline applied by the vertebrate genome project?
Awarded Apr 10, 2022 at 13:22
LD Score Regression Derivation hard to follow
Awarded Apr 2, 2022 at 23:57
How do I build a glycosylated protein from PDB files manually?
Awarded Mar 5, 2022 at 19:33
How Does Cox Proportional Hazard Model Describe Interaction between Covariates
Awarded Mar 3, 2022 at 17:06
How to remove duplicates from a fasta file using python
Awarded Feb 24, 2022 at 21:58
Standard Way to Preprocess Gene Expression?
Awarded Feb 5, 2022 at 13:36
fastqCleaner failing to launch in RStudio
Awarded Feb 3, 2022 at 21:32
Visualization of mutations in (part of) viral genome - existing tools?
Awarded Jan 28, 2022 at 19:10
Organelle genome genes
Awarded Jan 25, 2022 at 15:25
STAR aligner multiple fastq files
Awarded Jan 11, 2022 at 15:11
Nanopore FASTQ header specifications
Awarded Dec 9, 2021 at 21:05
Allele Count and Allele Frequency in VCF files
Awarded Nov 15, 2021 at 15:06
How to import a large amount of .bed, .gff, .vcf, .paf, .sam files into an SQL database?
Awarded Nov 12, 2021 at 2:33
Can SBOL encode DNA Assembly linkers?
Awarded Oct 21, 2021 at 14:43
Long-Covid (LC) GWAS project proposal: should I include a non-LC GWAS?
Awarded Oct 20, 2021 at 18:46
how do I predict bacterial small non-coding RNA for a specific mRNA?
Awarded Oct 18, 2021 at 2:35
Consensus on how to select SNPs for creating a phylogeny when the full dataset is too large
Awarded Oct 12, 2021 at 21:12
Compressing the human genome to few megabytes
Awarded Sep 16, 2021 at 10:41
How to subset genes and its nested features from a GFF file using a gene list
Awarded Sep 6, 2021 at 14:33
PDB: Download all biological assemblies
Awarded Aug 2, 2021 at 19:40
Why the gene symbol aliases have significantly different sequences?
Awarded Jul 15, 2021 at 17:48
Why the gene symbol aliases have significantly different sequences?
Awarded Jul 14, 2021 at 22:11
Hemoglobin subunits genes in scRNA-seq
Awarded Jun 17, 2021 at 8:19
Filter rows of VCF file for Match=EXACT?
Awarded Jun 13, 2021 at 11:05
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