Bioinformatics

Revival

 Revival
Answer more than 30 days after a question was asked as first answer scoring 2 or more. This badge can be awarded multiple times.
Awarded 140 times.
Methylation data: beta values are normally distributed
Awarded Sep 22 at 14:27
Downloading genomic protein files from accessions in Python
Awarded Sep 22 at 4:18
What is the difference between AnnotationDbi/org.Mm.eg.db and biomaRt/Mus.musculus for converting to gene symbols?
Awarded Aug 18 at 21:16
How to extract clusters from a phylogenetic tree?
Awarded Aug 17 at 7:50
Permutations of 4 amino acid sequence oligopeptide
Awarded Aug 7 at 21:11
Pymol: select low confidence regions from AlphaFold pdb file
Awarded Jul 22 at 17:17
Comparing differential expression across samples - is batch effect correction needed?
Awarded Jul 14 at 14:34
Convert Arlequin ("DNA" markers) to Genepop (PGDspider or otherwise)
Awarded Jun 16 at 12:01
Gene names from components in NMF analysis
Awarded Jun 15 at 6:56
Can you style network visualizations of directed graphs using NETWULF?
Awarded Jun 10 at 16:42
Can someone help me estimating the runtime of the pipeline applied by the vertebrate genome project?
Awarded Apr 10 at 13:22
LD Score Regression Derivation hard to follow
Awarded Apr 2 at 23:57
How do I build a glycosylated protein from PDB files manually?
Awarded Mar 5 at 19:33
How Does Cox Proportional Hazard Model Describe Interaction between Covariates
Awarded Mar 3 at 17:06
How to remove duplicates from a fasta file using python
Awarded Feb 24 at 21:58
Standard Way to Preprocess Gene Expression?
Awarded Feb 5 at 13:36
fastqCleaner failing to launch in RStudio
Awarded Feb 3 at 21:32
Visualization of mutations in (part of) viral genome - existing tools?
Awarded Jan 28 at 19:10
Organelle genome genes
Awarded Jan 25 at 15:25
STAR aligner multiple fastq files
Awarded Jan 11 at 15:11
Nanopore FASTQ header specifications
Awarded Dec 9, 2021 at 21:05
Allele Count and Allele Frequency in VCF files
Awarded Nov 15, 2021 at 15:06
How to import large .bed, .gff, .vcf, .paf, .sam files into an SQL database?
Awarded Nov 12, 2021 at 2:33
Can SBOL encode DNA Assembly linkers?
Awarded Oct 21, 2021 at 14:43
Long-Covid (LC) GWAS project proposal: should I include a non-LC GWAS?
Awarded Oct 20, 2021 at 18:46
how do I predict bacterial small non-coding RNA for a specific mRNA?
Awarded Oct 18, 2021 at 2:35
Consensus on how to select SNPs for creating a phylogeny when the full dataset is too large
Awarded Oct 12, 2021 at 21:12
Compressing the human genome to few megabytes
Awarded Sep 16, 2021 at 10:41
How to subset genes and its nested features from a GFF file using a gene list
Awarded Sep 6, 2021 at 14:33
PDB: Download all biological assemblies
Awarded Aug 2, 2021 at 19:40
Why the gene symbol aliases have significantly different sequences?
Awarded Jul 15, 2021 at 17:48
Why the gene symbol aliases have significantly different sequences?
Awarded Jul 14, 2021 at 22:11
Hemoglobin subunits genes in scRNA-seq
Awarded Jun 17, 2021 at 8:19
Filter rows of VCF file for Match=EXACT?
Awarded Jun 13, 2021 at 11:05
Filtering VEP annotation file
Awarded Jun 7, 2021 at 16:34
MUMmer plot error. Line 884. What to do?
Awarded Jun 3, 2021 at 16:57
How to programmatically classify a protein according to its genbank feature
Awarded May 30, 2021 at 15:07
What is the best way to address the question of doublets and multiplets in a single cell RNA seq data set?
Awarded May 30, 2021 at 11:36
Post docking evaluation
Awarded May 23, 2021 at 18:30
Theoretical limit of human genome compression
Awarded May 20, 2021 at 21:35
Output the linear predictor from a stratified cox model?
Awarded Apr 14, 2021 at 10:49
Finding SNP/Indel Markers of Interspecific Variation
Awarded Mar 7, 2021 at 2:57
Evaluate clusters of individuals by using their sequence data
Awarded Feb 22, 2021 at 2:48
Is there a way to do GWAS on phenotype data that is not normally distributed?
Awarded Feb 17, 2021 at 0:08
What's a good ontology for drug names?
Awarded Feb 4, 2021 at 12:42
parsimony and maximum likelihood tree comparison in R
Awarded Jan 3, 2021 at 14:15
How to input data for DESeq2 from individual HTSeq count?
Awarded Dec 19, 2020 at 6:11
Pooling data in metagenome assembly
Awarded Nov 24, 2020 at 13:04
Folded Protein Chunk Dimensional Classification?
Awarded Nov 14, 2020 at 3:30
Filtering out reads from a reference (e.g. rRNA) using bowtie2
Awarded Nov 9, 2020 at 16:03
Find rsIDs for GRCh37 SNPs and rsIDs for GRCh38 SNPs and compare for overlap
Awarded Nov 3, 2020 at 7:15
Extract residue sequence from pdb file (in biopython, but open to recommendations)
Awarded Oct 1, 2020 at 14:32
e-utils api: get chromosome position for each snp on a gene
Awarded Sep 30, 2020 at 0:41
Principle of TMT Tags in Multiplex Proteomics
Awarded Sep 16, 2020 at 4:35
Convert PAF format to SAM/BAM format
Awarded Sep 8, 2020 at 10:47
probability of an entire sequence, not just one value
Awarded Aug 26, 2020 at 21:12
Converting aligned fasta to plink ped/bed
Awarded Jul 29, 2020 at 16:08
How does picard's MarkDuplicate handle unmapped reads?
Awarded Jul 21, 2020 at 15:50
bcl2fastq2 v2.20.0 converstion software on Ubuntu 18.04
Awarded Jun 28, 2020 at 16:33
RepeatMasker annotation
Awarded Jun 28, 2020 at 16:33
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