Bioinformatics

Revival

 Revival
Answer more than 30 days after a question was asked as first answer scoring 2 or more. This badge can be awarded multiple times.
Awarded 130 times.
Can someone help me estimating the runtime of the pipeline applied by the vertebrate genome project?
Awarded Apr 10 at 13:22
LD Score Regression Derivation hard to follow
Awarded Apr 2 at 23:57
How do I build a glycosylated protein from PDB files manually?
Awarded Mar 5 at 19:33
How Does Cox Proportional Hazard Model Describe Interaction between Covariates
Awarded Mar 3 at 17:06
How to remove duplicates from a fasta file using python
Awarded Feb 24 at 21:58
Standard Way to Preprocess Gene Expression?
Awarded Feb 5 at 13:36
fastqCleaner failing to launch in RStudio
Awarded Feb 3 at 21:32
Visualization of mutations in (part of) viral genome - existing tools?
Awarded Jan 28 at 19:10
Organelle genome genes
Awarded Jan 25 at 15:25
STAR aligner multiple fastq files
Awarded Jan 11 at 15:11
Nanopore FASTQ header specifications
Awarded Dec 9, 2021 at 21:05
Allele Count and Allele Frequency in VCF files
Awarded Nov 15, 2021 at 15:06
How to import large .bed, .gff, .vcf, .paf, .sam files into an SQL database?
Awarded Nov 12, 2021 at 2:33
Can SBOL encode DNA Assembly linkers?
Awarded Oct 21, 2021 at 14:43
Long-Covid (LC) GWAS project proposal: should I include a non-LC GWAS?
Awarded Oct 20, 2021 at 18:46
how do I predict bacterial small non-coding RNA for a specific mRNA?
Awarded Oct 18, 2021 at 2:35
Consensus on how to select SNPs for creating a phylogeny when the full dataset is too large
Awarded Oct 12, 2021 at 21:12
Compressing the human genome to few megabytes
Awarded Sep 16, 2021 at 10:41
How to subset genes and its nested features from a GFF file using a gene list
Awarded Sep 6, 2021 at 14:33
PDB: Download all biological assemblies
Awarded Aug 2, 2021 at 19:40
Why the gene symbol aliases have significantly different sequences?
Awarded Jul 15, 2021 at 17:48
Why the gene symbol aliases have significantly different sequences?
Awarded Jul 14, 2021 at 22:11
Hemoglobin subunits genes in scRNA-seq
Awarded Jun 17, 2021 at 8:19
Filter rows of VCF file for Match=EXACT?
Awarded Jun 13, 2021 at 11:05
Filtering VEP annotation file
Awarded Jun 7, 2021 at 16:34
MUMmer plot error. Line 884. What to do?
Awarded Jun 3, 2021 at 16:57
How to programmatically classify a protein according to its genbank feature
Awarded May 30, 2021 at 15:07
What is the best way to address the question of doublets and multiplets in a single cell RNA seq data set?
Awarded May 30, 2021 at 11:36
Post docking evaluation
Awarded May 23, 2021 at 18:30
Theoretical limit of human genome compression
Awarded May 20, 2021 at 21:35
Output the linear predictor from a stratified cox model?
Awarded Apr 14, 2021 at 10:49
Finding SNP/Indel Markers of Interspecific Variation
Awarded Mar 7, 2021 at 2:57
Evaluate clusters of individuals by using their sequence data
Awarded Feb 22, 2021 at 2:48
Is there a way to do GWAS on phenotype data that is not normally distributed?
Awarded Feb 17, 2021 at 0:08
What's a good ontology for drug names?
Awarded Feb 4, 2021 at 12:42
parsimony and maximum likelihood tree comparison in R
Awarded Jan 3, 2021 at 14:15
How to input data for DESeq2 from individual HTSeq count?
Awarded Dec 19, 2020 at 6:11
Pooling data in metagenome assembly
Awarded Nov 24, 2020 at 13:04
Folded Protein Chunk Dimensional Classification?
Awarded Nov 14, 2020 at 3:30
Filtering out reads from a reference (e.g. rRNA) using bowtie2
Awarded Nov 9, 2020 at 16:03
Find rsIDs for GRCh37 SNPs and rsIDs for GRCh38 SNPs and compare for overlap
Awarded Nov 3, 2020 at 7:15
Extract residue sequence from pdb file (in biopython, but open to recommendations)
Awarded Oct 1, 2020 at 14:32
e-utils api: get chromosome position for each snp on a gene
Awarded Sep 30, 2020 at 0:41
Principle of TMT Tags in Multiplex Proteomics
Awarded Sep 16, 2020 at 4:35
Convert PAF format to SAM/BAM format
Awarded Sep 8, 2020 at 10:47
probability of an entire sequence, not just one value
Awarded Aug 26, 2020 at 21:12
Converting aligned fasta to plink ped/bed
Awarded Jul 29, 2020 at 16:08
How does picard's MarkDuplicate handle unmapped reads?
Awarded Jul 21, 2020 at 15:50
bcl2fastq2 v2.20.0 converstion software on Ubuntu 18.04
Awarded Jun 28, 2020 at 16:33
RepeatMasker annotation
Awarded Jun 28, 2020 at 16:33
Why is it necessary to add hydrogen and delete water before protein-ligand docking?
Awarded Jun 28, 2020 at 12:42
State of the art mutation simulation software
Awarded May 5, 2020 at 8:20
Help with the definitions of fields in a VCF output by Strelka
Awarded Apr 26, 2020 at 11:50
Generate VCF from different .bam files with different chromosome names
Awarded Apr 23, 2020 at 15:04
Genome annotation of a Bacillus strain
Awarded Apr 5, 2020 at 10:40
tool to visualize a collection of phylogenetic trees
Awarded Mar 10, 2020 at 7:05
Old versions of the reference genome and dbSNP
Awarded Feb 6, 2020 at 16:15
Generate SNP/indel annotation in Arabidopsis
Awarded Feb 2, 2020 at 0:25
cell type specific genes - heatmap using rank based approach
Awarded Jan 23, 2020 at 14:15
CRISPR Sequence Finder and Database Download
Awarded Dec 17, 2019 at 16:00
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