Revival

Revival

Answer more than 30 days after a question was asked as first answer scoring 2 or more. This badge can be awarded multiple times.

Awarded 113 times.

Compressing the human genome to few megabytes

Awarded 2 days ago

gringer♦

10.6k2 gold badges17 silver badges65 bronze badges

How to subset genes and its nested features from a GFF file using a gene list

Awarded Sep 6 at 14:33

The Unfun Cat

4213 silver badges10 bronze badges

PDB: Download all biological assemblies

Awarded Aug 2 at 19:40

Nate

1313 bronze badges

Why the gene symbol aliases have significantly different sequences?

Awarded Jul 15 at 17:48

gringer♦

10.6k2 gold badges17 silver badges65 bronze badges

Why the gene symbol aliases have significantly different sequences?

Awarded Jul 14 at 22:11

Emily_Ensembl

1,5645 silver badges9 bronze badges

Hemoglobin subunits genes in scRNA-seq

Awarded Jun 17 at 8:19

swbarnes2

1,5604 silver badges5 bronze badges

Filter rows of VCF file for Match=EXACT?

Awarded Jun 13 at 11:05

Seung-been Steven Lee

714 bronze badges

Filtering VEP annotation file

Awarded Jun 7 at 16:34

Rosaria Tornisiello

562 bronze badges

MUMmer plot error. Line 884. What to do?

Awarded Jun 3 at 16:57

Manuela

1739 bronze badges

How to programmatically classify a protein according to its genbank feature

Awarded May 30 at 15:07

Elisabeth.Gasteiger

2661 silver badge6 bronze badges

What is the best way to address the question of doublets and multiplets in a single cell RNA seq data set?

Awarded May 30 at 11:36

Dr_Hope

2631 silver badge8 bronze badges

Post docking evaluation

Awarded May 23 at 18:30

Soren

1,1515 silver badges18 bronze badges

Theoretical limit of human genome compression

Awarded May 20 at 21:35

Karel Břinda

1,8297 silver badges16 bronze badges

Output the linear predictor from a stratified cox model?

Awarded Apr 14 at 10:49

Ryan SY Kwan

2381 silver badge6 bronze badges

Finding SNP/Indel Markers of Interspecific Variation

Awarded Mar 7 at 2:57

Maximilian Press

1,9923 silver badges17 bronze badges

Evaluate clusters of individuals by using their sequence data

Awarded Feb 22 at 2:48

Ümit Akköse

213 bronze badges

Is there a way to do GWAS on phenotype data that is not normally distributed?

Awarded Feb 17 at 0:08

gringer♦

10.6k2 gold badges17 silver badges65 bronze badges

What's a good ontology for drug names?

Awarded Feb 4 at 12:42

ellimilial

2411 silver badge6 bronze badges

parsimony and maximum likelihood tree comparison in R

Awarded Jan 3 at 14:15

HD2000

212 bronze badges

How to input data for DESeq2 from individual HTSeq count?

Awarded Dec 19 '20 at 6:11

haci

3,0921 gold badge3 silver badges25 bronze badges

Pooling data in metagenome assembly

Awarded Nov 24 '20 at 13:04

Edward Kirton

1064 bronze badges

Folded Protein Chunk Dimensional Classification?

Awarded Nov 14 '20 at 3:30

Matteo Ferla

2,6241 silver badge16 bronze badges

Filtering out reads from a reference (e.g. rRNA) using bowtie2

Awarded Nov 9 '20 at 16:03

Bastian Schiffthaler

9561 silver badge6 bronze badges

Find rsIDs for GRCh37 SNPs and rsIDs for GRCh38 SNPs and compare for overlap

Awarded Nov 3 '20 at 7:15

Maxim Masiutin

1416 bronze badges

Extract residue sequence from pdb file (in biopython, but open to recommendations)

Awarded Oct 1 '20 at 14:32

Arap

562 bronze badges

e-utils api: get chromosome position for each snp on a gene

Awarded Sep 30 '20 at 0:41

Brad Holmes

665 bronze badges

Principle of TMT Tags in Multiplex Proteomics

Awarded Sep 16 '20 at 4:35

Soren

1,1515 silver badges18 bronze badges

Convert PAF format to SAM/BAM format

Awarded Sep 8 '20 at 10:47

KT8

714 bronze badges

probability of an entire sequence, not just one value

Awarded Aug 26 '20 at 21:12

Maximilian Press

1,9923 silver badges17 bronze badges

Converting aligned fasta to plink ped/bed

Awarded Jul 29 '20 at 16:08

PPK

7882 silver badges11 bronze badges

How does picard's MarkDuplicate handle unmapped reads?

Awarded Jul 21 '20 at 15:50

James Hawley

9975 silver badges14 bronze badges

bcl2fastq2 v2.20.0 converstion software on Ubuntu 18.04

Awarded Jun 28 '20 at 16:33

Mike

412 bronze badges

RepeatMasker annotation

Awarded Jun 28 '20 at 16:33

Tane

314 bronze badges

Why is it necessary to add hydrogen and delete water before protein-ligand docking?

Awarded Jun 28 '20 at 12:42

fra

4272 silver badges5 bronze badges

State of the art mutation simulation software

Awarded May 5 '20 at 8:20

M__

5,7232 gold badges16 silver badges36 bronze badges

Help with the definitions of fields in a VCF output by Strelka

Awarded Apr 26 '20 at 11:50

Geraldine_VdAuwera

3701 silver badge13 bronze badges

Generate VCF from different .bam files with different chromosome names

Awarded Apr 23 '20 at 15:04

KT8

714 bronze badges

Genome annotation of a Bacillus strain

Awarded Apr 5 '20 at 10:40

Felipe Almeida

1586 bronze badges

tool to visualize a collection of phylogenetic trees

Awarded Mar 10 '20 at 7:05

user3479780

4073 silver badges8 bronze badges

Old versions of the reference genome and dbSNP

Awarded Feb 6 '20 at 16:15

dschmelt

213 bronze badges

Generate SNP/indel annotation in Arabidopsis

Awarded Feb 2 '20 at 0:25

Ben_Ensembl

463 bronze badges

cell type specific genes - heatmap using rank based approach

Awarded Jan 23 '20 at 14:15

Scott Gigante

2,0231 gold badge11 silver badges31 bronze badges

CRISPR Sequence Finder and Database Download

Awarded Dec 17 '19 at 16:00

Cody Glickman

1731 silver badge7 bronze badges

how to generate an scRNA counts file

Awarded Nov 24 '19 at 4:10

jack_bioinf

313 bronze badges

Calculating p-value for introns which are retained (or not) between 2 conditions

Awarded Nov 14 '19 at 15:00

Ian Sudbery

3,1819 silver badges20 bronze badges

How can I use UpSet plot for expression/RNA-seq data

Awarded Oct 24 '19 at 19:15

alan ocallaghan

1214 bronze badges

How to allow "half windows" in biopython?

Awarded Sep 25 '19 at 17:40

xbello

1477 bronze badges

How I can reproduce this heat map

Awarded Aug 31 '19 at 7:35

haci

3,0921 gold badge3 silver badges25 bronze badges

Calculate molecular mass from chemical formula C9H15N4O8P with Python?

Awarded Aug 26 '19 at 18:15

Zac R.

1436 bronze badges

Cluster is split in 2-3 locations on tsne plot - Suerat

Awarded Aug 23 '19 at 9:30

haci

3,0921 gold badge3 silver badges25 bronze badges

Protein SCA and DCA

Awarded Aug 12 '19 at 6:20

Kohl Kinning

1,0995 silver badges25 bronze badges

Problem: "Pair-end" reads scRNA seq data (Drop-seq)

Awarded Jul 30 '19 at 14:05

Jim Notwell

212 bronze badges

What is the purpose of 'Folder locations' in MaxQuant?

Awarded Jul 8 '19 at 9:20

USER_1

1213 bronze badges

What is the `table` parameter in the UCSU ldHgGene tool?

Awarded Jun 14 '19 at 12:30

knowah

462 bronze badges

In Uniprot how do I know which variants are mutations and which are polymorphic?

Awarded Jun 11 '19 at 18:40

Elisabeth.Gasteiger

2661 silver badge6 bronze badges

Are duplicate variants against the VCF standard?

Awarded Jun 5 '19 at 8:00

Migwell

3302 silver badges8 bronze badges

Database for proteome-wide predictions of protein structures

Awarded May 24 '19 at 9:20

jgreener

8812 silver badges8 bronze badges

BUSCO does not find buscos in reference sequence of C. elegans (technical problem)

Awarded May 11 '19 at 18:35

Jvstonebridge

495 bronze badges

Order of batch effects removal, data imputation and library size normalization in scRNA-seq data

Awarded May 8 '19 at 14:50

Scott Gigante

2,0231 gold badge11 silver badges31 bronze badges

Is it possible to merge scRNAseq data from experiments with different design?

Awarded Mar 4 '19 at 20:50

Tom Kelly

8635 silver badges18 bronze badges

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