All Questions
5 questions
1
vote
3
answers
1k
views
How can I remove FASTA sequences with an asterisk inside the sequence?
I have several protein sequences with an asterisk in the middle of the sequence, and I'd like to remove those sequences.
In the example below, I have three sequences:
From this example, I would like ...
- 161
1
vote
2
answers
102
views
Generate consensus protein sequence from relatively gappy alignment?
I would like to know what would be the best way to generate a full-length consensus sequence?
I want to obtain a single representative sequence from a relatively gappy multiple sequence alignment of ...
- 2,364
4
votes
1
answer
239
views
Programmatic way of accessing the FASTA sequence similarity tool (or similar) in Python
I am looking for a tool that performs a sequence similarity algorithm for proteins. More specifically, I am looking for something that would be usable in Python (or anything else usable in the command ...
- 425
0
votes
0
answers
40
views
Please help me with my command!
I am looking for a command to count the total number of unique proteins in a file. For instance I wrote a command to BLAST XYZ proteins as query against the DLY proteins as a database to determine the ...
- 15
2
votes
1
answer
71
views
Identifying proteins in a concatenated protein sequences [closed]
I have a 120-concatenated protein sequence in a fasta file. I would like to split by proteins.
How can I identify each protein?
